| Chekepa Creek | Day, SD | 22.2 miles | NE |
| Antelope Creek | Day, SD | 23.4 miles | NW |
| Indian River | Grant, SD | 24.2 miles | SE |
| Soo Creek | Codington, SD | 27.3 miles | SE |
| Mahoney Creek | Codington, SD | 29.4 miles | SE |
| Putney Slough | Brown, SD | 31.8 miles | NW |
| Moccasin Creek | Brown, SD | 32.9 miles | NW |
| Mud Creek | Codington, SD | 34.4 miles | SE |
| Gronseth Slough | Marshall, SD | 35.2 miles | NW |
| Big Coulee Creek | Roberts, SD | 36.4 miles | NE |
| Big Spring Creek | Roberts, SD | 36.4 miles | NE |
| Crow Creek | Marshall, SD | 36.7 miles | NW |
| Hines Creek | Roberts, SD | 37 miles | NE |
| Agency Creek | Roberts, SD | 37 miles | NE |
| Goodwill Creek | Roberts, SD | 37.3 miles | NE |
| Standfast Creek | Roberts, SD | 37.3 miles | NE |
| Mud Creek | Spink, SD | 38.1 miles | SW |
| Elm River | Brown, ND | 38.2 miles | NW |
| Elm River | Brown, SD | 38.2 miles | NW |
| Munson Creek | Marshall, SD | 39.3 miles | NE |
| Jorgenson River | Roberts, SD | 40.6 miles | NE |
| Willow Creek | Codington, SD | 41 miles | SE |
| Foot Creek | Brown, SD | 41.8 miles | NW |
| LaFrambois Creek | Marshall, SD | 42.9 miles | NE |
| Little Minnesota River | Roberts, MN | 43.8 miles | NE |
| Little Minnesota River | Roberts, SD | 43.8 miles | NE |
| Little Minnesota River | Big Stone, MN | 43.8 miles | NE |
| Little Minnesota River | Big Stone, SD | 43.8 miles | NE |
| Steer Creek | Traverse, MN | 43.8 miles | NE |
| Fish Creek | Big Stone, MN | 44.9 miles | NE |
| Dry Run | Brown, ND | 45.1 miles | NW |
| Dry Run | Brown, SD | 45.1 miles | NW |
| Jim Creek | Roberts, SD | 45.3 miles | NE |
| Cottonwood Slough | Roberts, SD | 45.8 miles | NE |
| Dry Run | Spink, SD | 46.1 miles | SW |
| Hartford Beach Creek | Roberts, SD | 46.8 miles | NE |
| Wild Rice Creek | Marshall, ND | 48.1 miles | NW |
| Wild Rice Creek | Marshall, SD | 48.1 miles | NW |
| Timber Creek | Spink, SD | 48.1 miles | SW |
| Wild Rice Creek | Sargent, ND | 48.1 miles | NW |
| Wild Rice Creek | Sargent, SD | 48.1 miles | NW |
| Snake Creek | Spink, SD | 48.8 miles | SW |
| LaBelle Creek | Marshall, ND | 49.1 miles | NE |
| LaBelle Creek | Marshall, SD | 49.1 miles | NE |
| La Belle Creek | Sargent, ND | 49.1 miles | NE |
| La Belle Creek | Sargent, SD | 49.1 miles | NE |
| Dry Run | Dickey, ND | 49.2 miles | NW |
| Dry Run | Dickey, SD | 49.2 miles | NW |
| South Fork Snake Creek | Spink, SD | 50.2 miles | SW |
| Turtle Creek | Spink, SD | 50.2 miles | SW |
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