| Lake Campbell | Brookings, SD | 6 miles | SW |
| Lake Badus | Lake, SD | 20.8 miles | SW |
| Shaokotan Lake | Lincoln, MN | 22.8 miles | NE |
| Split Rock Lake | Pipestone, MN | 35.1 miles | SE |
| Splitrock Lake | Pipestone, MN | 35.2 miles | SE |
| Coon Creek | Lyon, MN | 37.3 miles | NE |
| Canby Lake | Yellow Medicine, MN | 37.7 miles | NE |
| Brawner Lake | Lyon, MN | 42.9 miles | NE |
| Lake Marion | Lyon, MN | 45.8 miles | NE |
| Yankton Lake | Lyon, MN | 46.3 miles | SE |
| Lake Carthage | Miner, SD | 46.5 miles | SW |
| Lake Agnew | Kingsbury, SD | 47.4 miles | NW |
| Dog Creek Reservoir | Lyon, MN | 47.4 miles | SE |
| Sioux Falls Diversion Channel | Minnehaha, SD | 48.5 miles | SE |
| Redwood River Reservoir | Lyon, MN | 49.1 miles | NE |
| North Mound Creek Pool | Rock, MN | 50 miles | SE |
| South Mound Creek Pool | Rock, MN | 50.6 miles | SE |
| Lake Iroquois | Kingsbury, SD | 51.8 miles | NW |
| Sarah Lake | Murray, MN | 52 miles | SE |
| Osceola Lake | Kingsbury, SD | 52.4 miles | NW |
| East Fork Vermillion River Reservoir | McCook, SD | 52.7 miles | SW |
| East Vermillion Lake | McCook, SD | 52.8 miles | SW |
| Rock River Reservoir | Rock, MN | 53.7 miles | SE |
| Shetek Lake | Murray, MN | 56.9 miles | SE |
| Staum Dam | Beadle, SD | 58.1 miles | NW |
| Cottonwood Lake | Lyon, MN | 58.4 miles | NE |
| Lake Alvin | Lincoln, SD | 60.1 miles | SE |
| Plum Creek Lake | Redwood, MN | 64.3 miles | SE |
| Timm Lake | Yellow Medicine, MN | 64.6 miles | NE |
| Lake Farley | Grant, SD | 64.6 miles | NE |
| Chippewa River Reservoir | Chippewa, MN | 65.1 miles | NE |
| Fordham Dam | Clark, SD | 65.2 miles | NW |
| Lake Pahoja | Lyon, IA | 65.4 miles | SE |
| Fulda Lake | Murray, MN | 66.9 miles | SE |
| Lac Qui Parle | Lac qui Parle, MN | 67.3 miles | NE |
| Lac Qui Parle Reservoir | Lac qui Parle, MN | 67.4 miles | NE |
| Fulton Lake | Hanson, SD | 67.9 miles | SW |
| Lake Fulton | Hanson, SD | 67.9 miles | SW |
| Logan Dam | Clark, SD | 68.2 miles | NW |
| Hanson Lake | Hanson, SD | 68.8 miles | SW |
| Marsh Lake | Swift, MN | 69.2 miles | NE |
| Stony Run Lake | Beadle, SD | 69.7 miles | NW |
| Big Stone Lake-Whetstone River | Lac qui Parle, MN | 69.9 miles | NE |
| Watson Sag | Chippewa, MN | 69.9 miles | NE |
| Ravine Park Lake | Beadle, SD | 70.1 miles | NW |
| Big Stone Lake | Big Stone, MN | 71.3 miles | NE |
| Minnesota River Reservoir | Yellow Medicine, MN | 71.8 miles | NE |
| Wildlife Pond | Cottonwood, MN | 72.3 miles | SE |
| Wildlife Impoundment | Cottonwood, MN | 72.3 miles | SE |
| Lake Mitchell | Davison, SD | 72.8 miles | SW |
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