| Mortimer Slough | Brookings, SD | 3.6 miles | SW |
| Lake Oakwood | Brookings, SD | 3.6 miles | SW |
| Round Lake | Brookings, SD | 3.9 miles | SW |
| Moe Slough | Brookings, SD | 4.1 miles | SW |
| Lake Tetonkaha | Brookings, SD | 4.3 miles | SW |
| Johnson Lake | Brookings, SD | 4.3 miles | SW |
| Turtle Lake | Brookings, SD | 4.7 miles | SW |
| Oakwood Lakes | Brookings, SD | 5.8 miles | SW |
| Lake Mitchell | Brookings, SD | 8.9 miles | SW |
| Lake Poinsett | Hamlin, SD | 9 miles | NW |
| Lake Goldsmith | Brookings, SD | 9.8 miles | SW |
| Lake Thisted | Kingsbury, SD | 10.8 miles | SW |
| Lake Albert | Kingsbury, SD | 11.3 miles | NW |
| Dry Lake | Hamlin, SD | 11.6 miles | NW |
| Lake Badger | Kingsbury, SD | 12 miles | SW |
| Lake Florence | Hamlin, SD | 13.1 miles | NW |
| Lake Saint John | Hamlin, SD | 13.6 miles | NW |
| Lake Mary | Hamlin, SD | 14 miles | NW |
| Brush Lake | Brookings, SD | 14.2 miles | SW |
| Lake Norden | Hamlin, SD | 15.1 miles | NW |
| Twin Lakes | Kingsbury, SD | 16.4 miles | SW |
| Lake Sinai | Brookings, SD | 16.4 miles | SW |
| Gertson Slough | Hamlin, SD | 16.5 miles | NW |
| Lake Marsh | Hamlin, SD | 18.9 miles | NW |
| Park Slough (historical) | Hamlin, SD | 18.9 miles | NW |
| Pederson Slough | Brookings, SD | 19.2 miles | SW |
| Oak Lake | Brookings, SD | 20 miles | NE |
| Molumby Slough | Lake, SD | 20.4 miles | SW |
| Lake Whitewood | Kingsbury, SD | 20.4 miles | SW |
| Mud Lake | Lake, SD | 22 miles | SW |
| East Lake Badus | Lake, SD | 22 miles | SW |
| Spring Lake | Kingsbury, SD | 22.1 miles | SW |
| Clear Lake | Hamlin, SD | 22.9 miles | NW |
| Clear Lake | Deuel, SD | 23.1 miles | NE |
| Fox Lake | Deuel, SD | 23.4 miles | NE |
| Lake Hendricks | Brookings, SD | 23.9 miles | NE |
| Lake Hendricks | Lincoln, MN | 23.9 miles | NE |
| Fish Lake | Deuel, SD | 24 miles | NE |
| Lake Sutton | Deuel, SD | 24.5 miles | NE |
| Green Lake | Lake, SD | 25.2 miles | SW |
| Ketchum Lake | Deuel, SD | 25.7 miles | NE |
| South Coteau Lake | Deuel, SD | 25.9 miles | NE |
| Twin Lake | Lincoln, MN | 26 miles | NE |
| Mud Lake | Deuel, SD | 26.1 miles | NE |
| East Coteau Lake | Deuel, SD | 26.3 miles | NE |
| North Coteau Lake | Deuel, SD | 26.3 miles | NE |
| Dry Lake | Lake, SD | 27 miles | SW |
| Pelican Lake | Lake, SD | 27.1 miles | SE |
| South Slough | Deuel, SD | 27.2 miles | NE |
| Lake Cochrane | Deuel, SD | 27.3 miles | NE |
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