| McIntosh Lake | Corson, SD | 3.4 miles | NE |
| Mallard Lake | Corson, SD | 5.8 miles | NW |
| Tatanka Lake | Corson, SD | 9.1 miles | NE |
| Morristown East Lake | Corson, SD | 13.8 miles | NW |
| Morristown Lake | Corson, SD | 18.9 miles | NW |
| Lake Walton | Dewey, SD | 30.4 miles | SE |
| Isabel Lake | Dewey, SD | 30.6 miles | SW |
| Lemmon Lake | Perkins, SD | 31.9 miles | SW |
| Township Lake | Adams, ND | 33.9 miles | NW |
| Pretty Rock Lake | Grant, ND | 37.3 miles | NW |
| Flat Creek Lake | Perkins, SD | 39.1 miles | SW |
| Little Moreau Lake | Dewey, SD | 39.2 miles | SE |
| Peach Lake | Dewey, SD | 40.6 miles | SE |
| Trail City Railroad Lake | Corson, SD | 41 miles | SE |
| Shadehill Reservoir | Perkins, SD | 41 miles | SW |
| Jewitt Pond | Dewey, SD | 44.1 miles | SW |
| Whitehorse Lake | Dewey, SD | 45 miles | SE |
| White Butte Reservoir | Perkins, SD | 47.5 miles | NW |
| White Butte Reservoir | Adams, ND | 47.5 miles | NW |
| Johnson Dam | Perkins, SD | 48.9 miles | SW |
| Lake Pocasse | Campbell, SD | 51.8 miles | NE |
| Swan Lake | Dewey, SD | 52 miles | SE |
| Sunburst Lake | Emmons, ND | 53.8 miles | NE |
| Lake Tschida | Grant, ND | 53.9 miles | NW |
| Goose Creek Dam | Dewey, SD | 55.8 miles | SE |
| Molstad Lake | Walworth, SD | 56.1 miles | SE |
| Bedners Dam | Ziebach, SD | 57.3 miles | SW |
| Eagle Butte Lake | Dewey, SD | 58.2 miles | SE |
| Brueschke Dam | Dewey, SD | 58.2 miles | SE |
| Fish Creek Lake | Morton, ND | 58.7 miles | NE |
| Lake of the Woods | Ziebach, SD | 58.8 miles | SW |
| Sandoz Dam | Ziebach, SD | 61.2 miles | SW |
| Oliver Dam | Ziebach, SD | 61.6 miles | SW |
| Sargent Dam | Ziebach, SD | 64.5 miles | SW |
| Rattlesnake Petes Pond | Perkins, SD | 64.9 miles | SW |
| Ehler Lake | Adams, ND | 65.6 miles | NW |
| Larson Lake | Hettinger, ND | 66.5 miles | NW |
| Miller Dam | Ziebach, SD | 66.5 miles | SW |
| Springwater Dam | Emmons, ND | 66.6 miles | NE |
| Appert Lake | Emmons, ND | 67.9 miles | NE |
| Sweet Briar Lake | Morton, ND | 68.2 miles | NE |
| Crown Butte Lake | Morton, ND | 69.4 miles | NE |
| Rohrich Dam | Emmons, ND | 70.5 miles | NE |
| Dupree Lake | Meade, SD | 70.7 miles | SW |
| Storm Creek Lake | Morton, ND | 70.9 miles | NW |
| Storm Creek Lake | Morton, ND | 71.1 miles | NW |
| Herren Dam | Ziebach, SD | 71.4 miles | SW |
| Campbell Dam | Ziebach, SD | 72.4 miles | SW |
| Flickertail Lake | Emmons, ND | 72.9 miles | NE |
| Sears Dam | Ziebach, SD | 73.7 miles | SW |
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