| Pooley Creek | Miner, SD | 12.3 miles | SW |
| Little Vermillion River | McCook, SD | 19.3 miles | SE |
| Silver Creek | Lake, SD | 21.3 miles | NE |
| Park Creek | Lake, SD | 22.2 miles | NE |
| Wolf Drain | Lake, SD | 23.7 miles | NE |
| Dry Run | Sanborn, SD | 24.5 miles | NW |
| West Redstone Creek | Sanborn, SD | 25 miles | NW |
| Negro Creek | Lake, SD | 25.1 miles | NE |
| Johnson Creek | Hanson, SD | 25.2 miles | SW |
| Pierre Creek | Hanson, SD | 25.3 miles | SW |
| Jim Creek | Sanborn, SD | 25.6 miles | NW |
| Battle Creek | McCook, SD | 25.7 miles | SE |
| North Buffalo Creek | Lake, SD | 25.7 miles | NE |
| Rock Creek | Hanson, SD | 26 miles | SW |
| Enemy Creek | Hanson, SD | 26 miles | SW |
| Dry Run | Davison, SD | 26.1 miles | SW |
| Firesteel Creek | Davison, SD | 26.6 miles | SW |
| Dry Run | Davison, SD | 26.8 miles | SW |
| Bloom Creek | Hanson, SD | 28.5 miles | SW |
| Buffalo Creek | Lake, SD | 30 miles | SE |
| Sand Creek | Sanborn, SD | 31.3 miles | NW |
| Redstone Creek | Sanborn, SD | 31.6 miles | NW |
| Colton Creek | Minnehaha, SD | 32.3 miles | SE |
| West Branch Skunk Creek | Minnehaha, SD | 32.4 miles | SE |
| South Fork Twelvemile Creek | Hutchinson, SD | 34 miles | SW |
| Pony Creek | Hutchinson, SD | 34.3 miles | SW |
| Twelvemile Creek | Hutchinson, SD | 34.8 miles | SW |
| Elm Creek | Hutchinson, SD | 35.2 miles | SW |
| Dry Creek | Hutchinson, SD | 35.5 miles | SW |
| Plum Creek | Hutchinson, SD | 35.5 miles | SW |
| Coffee Creek | Hutchinson, SD | 35.7 miles | SW |
| North Fork Twelvemile Creek | Davison, SD | 36.3 miles | SW |
| Wolf Creek | Hutchinson, SD | 37.6 miles | SW |
| Battle Creek | Moody, SD | 38 miles | NE |
| South Fork Pearl Creek | Beadle, SD | 38.4 miles | NW |
| Stony Run | Beadle, SD | 38.8 miles | NW |
| Marsh Creek | Beadle, SD | 38.9 miles | NW |
| Middle Pearl Creek | Beadle, SD | 38.9 miles | NW |
| North Branch Dry Creek | Hutchinson, SD | 39.4 miles | SW |
| South Branch Dry Creek | Hutchinson, SD | 39.5 miles | SW |
| West Fork Vermillion River | Turner, SD | 40 miles | SE |
| East Fork Vermillion River | Turner, SD | 40 miles | SE |
| Willow Creek | Minnehaha, SD | 40.4 miles | SE |
| Bachelor Creek | Moody, SD | 40.6 miles | NE |
| Pearl Creek | Beadle, SD | 40.8 miles | NW |
| West Branch Firesteel Creek | Davison, SD | 41 miles | SW |
| Lake Campbell Outlet | Brookings, SD | 41.5 miles | NE |
| Medary Creek | Moody, MN | 42.1 miles | NE |
| Medary Creek | Moody, SD | 42.1 miles | NE |
| Medary Creek | Lincoln, MN | 42.1 miles | NE |
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