| Burke Slough | Miner, SD | 11 miles | NW |
| Reynolds Slough | Lake, SD | 14.6 miles | NE |
| Forsch Lake | McCook, SD | 16.5 miles | SW |
| Fods Slough | Lake, SD | 20.3 miles | NE |
| Englehardt Slough | Minnehaha, SD | 27.6 miles | SE |
| Rifle Lake | Sanborn, SD | 29.2 miles | NW |
| Dry Lake Number Two | Clark, SD | 55.8 miles | NW |
| Cady Lake | Jerauld, SD | 56.2 miles | NW |
| Wilkie Slough | Aurora, SD | 58.1 miles | SW |
| Norwegian Slough | Beadle, SD | 60.4 miles | NW |
| Grow Lake | Jerauld, SD | 61.3 miles | NW |
| Haucks Lake | Bon Homme, SD | 63.3 miles | SW |
| Five Ponds | Hamlin, SD | 64.5 miles | NE |
| Wolf Slough | Codington, SD | 64.6 miles | NE |
| Bracken Slough | Beadle, SD | 65.5 miles | NW |
| Black Slough | Brookings, SD | 67.4 miles | NE |
| Caseys Slough | Clark, SD | 69.2 miles | NW |
| Freeland Lake | Brule, SD | 71.4 miles | SW |
| Rempfer Lake | Jerauld, SD | 72 miles | NW |
| Torrey Lake | Brule, SD | 72.8 miles | SW |
| Dry Lake Number One | Clark, SD | 73.2 miles | NW |
| Snow Lake | Brule, SD | 74.9 miles | SW |
| Lake George | Charles Mix, SD | 79.4 miles | SW |
| Lake George | Charles Mix, SD | 79.5 miles | SW |
| Conner Slough | Deuel, SD | 81.5 miles | NE |
| Iron Lake | Murray, MN | 83.5 miles | NE |
| Mallard Slough | Clark, SD | 85.4 miles | NW |
| Collins Slough | Hand, SD | 87.1 miles | NW |
| Congers Marsh | Yellow Medicine, MN | 87.6 miles | NE |
| Clear Lake | Murray, MN | 91.6 miles | NE |
| Burton Lake | Yellow Medicine, MN | 92.4 miles | NE |
| Wasmund Slough | Osceola, IA | 93.7 miles | SE |
| Slaughter Slough | Murray, MN | 94.4 miles | NE |
| Lanners Lake | Yellow Medicine, MN | 94.9 miles | NE |
| Myhre State Wildlife Management Area | Yellow Medicine, MN | 100.8 miles | NE |
| Miedd Lake | Yellow Medicine, MN | 101.7 miles | NE |
| Lake Goodenough | Union, SD | 102.5 miles | SE |
| Mud Lake | Union, SD | 104.5 miles | SE |
| Tenmile Lake | Lac qui Parle, MN | 105 miles | NE |
| Griffin Lake | Swift, MN | 121.8 miles | NE |
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