| West Redstone Creek | Sanborn, SD | 14.2 miles | SW |
| Middle Pearl Creek | Beadle, SD | 17.9 miles | NW |
| South Fork Pearl Creek | Beadle, SD | 18 miles | NW |
| Redstone Creek | Sanborn, SD | 19.8 miles | SW |
| Marsh Creek | Beadle, SD | 20.2 miles | NW |
| Pooley Creek | Miner, SD | 20.7 miles | SW |
| Stony Run | Beadle, SD | 20.8 miles | NW |
| Pearl Creek | Beadle, SD | 21.4 miles | NW |
| Sand Creek | Sanborn, SD | 21.4 miles | SW |
| Jim Creek | Sanborn, SD | 21.9 miles | SW |
| Dry Run | Sanborn, SD | 22.7 miles | SW |
| Cain Creek | Beadle, SD | 23 miles | NW |
| Stony Run | Beadle, SD | 25.2 miles | NW |
| Shue Creek | Beadle, SD | 26.9 miles | NW |
| Dry Run | Davison, SD | 31.3 miles | SW |
| Silver Creek | Lake, SD | 33 miles | SE |
| Rock Creek | Hanson, SD | 33.4 miles | SW |
| Park Creek | Lake, SD | 35.2 miles | SE |
| Firesteel Creek | Davison, SD | 35.3 miles | SW |
| Dry Run | Davison, SD | 35.3 miles | SW |
| Foster Creek | Beadle, SD | 35.6 miles | NW |
| Johnson Creek | Hanson, SD | 37.8 miles | SW |
| Enemy Creek | Hanson, SD | 38.3 miles | SW |
| Dolph Creek | Hamlin, SD | 38.6 miles | NE |
| Wolf Drain | Lake, SD | 39.3 miles | SE |
| Pierre Creek | Hanson, SD | 39.3 miles | SW |
| West Branch Firesteel Creek | Davison, SD | 39.8 miles | SW |
| Negro Creek | Lake, SD | 40.1 miles | SE |
| North Buffalo Creek | Lake, SD | 41.3 miles | SE |
| Little Vermillion River | McCook, SD | 41.4 miles | SE |
| Silver Creek | Beadle, SD | 42.3 miles | NW |
| Battle Creek | Moody, SD | 42.3 miles | NE |
| North Deer Creek | Brookings, SD | 43.7 miles | NE |
| Sixmile Creek | Brookings, SD | 43.9 miles | NE |
| Bloom Creek | Hanson, SD | 44.1 miles | SW |
| Lake Campbell Outlet | Brookings, SD | 45.2 miles | NE |
| North Fork Twelvemile Creek | Davison, SD | 45.8 miles | SW |
| Buffalo Creek | Lake, SD | 45.8 miles | SE |
| Medary Creek | Lincoln, MN | 47.3 miles | NE |
| Medary Creek | Lincoln, SD | 47.3 miles | NE |
| Medary Creek | Moody, MN | 47.3 miles | NE |
| Medary Creek | Moody, SD | 47.3 miles | NE |
| Bullhead Run | Hamlin, SD | 47.8 miles | NE |
| Peg Munky Run | Brookings, SD | 48.1 miles | NE |
| Hidewood Creek | Hamlin, SD | 48.1 miles | NE |
| Battle Creek | McCook, SD | 48.6 miles | SE |
| Deer Creek | Brookings, SD | 49.6 miles | NE |
| Coffee Creek | Hutchinson, SD | 49.8 miles | SW |
| Stray Horse Creek | Hamlin, SD | 50 miles | NE |
| South Fork Twelvemile Creek | Hutchinson, SD | 50.2 miles | SW |
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