| Burke Slough | Miner, SD | 14.2 miles | SE |
| Rifle Lake | Sanborn, SD | 14.2 miles | SW |
| Reynolds Slough | Lake, SD | 29.6 miles | SE |
| Dry Lake Number Two | Clark, SD | 34.9 miles | NE |
| Fods Slough | Lake, SD | 35.2 miles | SE |
| Forsch Lake | McCook, SD | 38.2 miles | SE |
| Norwegian Slough | Beadle, SD | 41 miles | NW |
| Cady Lake | Jerauld, SD | 45.8 miles | SW |
| Bracken Slough | Beadle, SD | 45.9 miles | NW |
| Wolf Slough | Codington, SD | 47.8 miles | NE |
| Caseys Slough | Clark, SD | 48.9 miles | NE |
| Englehardt Slough | Minnehaha, SD | 50.3 miles | SE |
| Five Ponds | Hamlin, SD | 50.9 miles | NE |
| Grow Lake | Jerauld, SD | 52 miles | SW |
| Dry Lake Number One | Clark, SD | 52.2 miles | NE |
| Wilkie Slough | Aurora, SD | 53.2 miles | SW |
| Rempfer Lake | Jerauld, SD | 57.7 miles | NW |
| Mallard Slough | Clark, SD | 63.7 miles | NW |
| Black Slough | Brookings, SD | 65.6 miles | NE |
| Freeland Lake | Brule, SD | 69.6 miles | SW |
| Collins Slough | Hand, SD | 70.5 miles | NW |
| Conner Slough | Deuel, SD | 72.2 miles | NE |
| Torrey Lake | Brule, SD | 72.6 miles | SW |
| Snow Lake | Brule, SD | 73.1 miles | SW |
| Lake George | Charles Mix, SD | 80 miles | SW |
| Lake George | Charles Mix, SD | 80 miles | SW |
| Haucks Lake | Bon Homme, SD | 80.2 miles | SW |
| Congers Marsh | Yellow Medicine, MN | 87.3 miles | NE |
| Iron Lake | Murray, MN | 92.1 miles | SE |
| Burton Lake | Yellow Medicine, MN | 92.2 miles | NE |
| Lanners Lake | Yellow Medicine, MN | 93.3 miles | NE |
| Myhre State Wildlife Management Area | Yellow Medicine, MN | 100.7 miles | NE |
| Tenmile Lake | Lac qui Parle, MN | 102.2 miles | NE |
| Miedd Lake | Yellow Medicine, MN | 102.7 miles | NE |
| Sandy Slough | Big Stone, MN | 106 miles | NE |
| Wet Lake | Traverse, MN | 111.5 miles | NE |
| Sweetwater Lake | Big Stone, MN | 111.8 miles | NE |
| Flood Slough | Traverse, MN | 111.9 miles | NE |
| Government Slough | Big Stone, MN | 112.4 miles | NE |
| Humpty-dumpty Slough | Big Stone, MN | 112.7 miles | NE |
| Griffin Lake | Swift, MN | 113.1 miles | NE |
| Lone Tree Slough | Big Stone, MN | 113.2 miles | NE |
| Dismal Swamp | Big Stone, MN | 114.7 miles | NE |
| Byrne Lake | Swift, MN | 124.6 miles | NE |
| Mud Lake | Stevens, MN | 124.6 miles | NE |
| Coleman Slough | Stevens, MN | 130.9 miles | NE |
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